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Th2 skewing in patients with disseminated coccidioidomycosis
Timothy J. Thauland, Smriti S. Nagarajan, Alexis V. Stephens, Samantha L. Jensen, Anviksha Srivastava, Miguel A. Moreno Lastre, Terrie S. Ahn, Chantana Bun, Michael T. Trump, Royce H. Johnson, George R. Thompson III, Maria I. Garcia-Lloret, Valerie A. Arboleda, Manish J. Butte
Timothy J. Thauland, Smriti S. Nagarajan, Alexis V. Stephens, Samantha L. Jensen, Anviksha Srivastava, Miguel A. Moreno Lastre, Terrie S. Ahn, Chantana Bun, Michael T. Trump, Royce H. Johnson, George R. Thompson III, Maria I. Garcia-Lloret, Valerie A. Arboleda, Manish J. Butte
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Clinical Research and Public Health Immunology Infectious disease

Th2 skewing in patients with disseminated coccidioidomycosis

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Abstract

BACKGROUND Disseminated coccidioidomycosis (DCM) is an often fatal and otherwise intractable condition requiring lifelong antifungal treatment. We have previously shown that a deranged polarization of CD4+ T cells toward a Th2 phenotype can exist in the context of DCM. Here, we studied a large population to determine the frequency of abnormal Th2 skewing of CD4+ T cells in patients with coccidioidomycosis and to identify underlying genetic mechanisms supporting this phenotype.METHODS We collected PBMCs from 204 patients with coccidioidomycosis, including 96 patients with disseminated disease. We measured immune phenotypes and cytokine production by CD4+ T cells from patients and healthy controls, and comparisons between groups were made based on disease severity and demographics. Whole-genome sequencing was conducted on 180 individuals who also had cytokine profiling.RESULTS We found that approximately 25% of patients with DCM had a CD4+ T cell compartment that was abnormally skewed toward a Th2 phenotype, and Th2 skewing was highly correlated with male sex. Coculture of T cells with the IL-4R/IL-13R–blocking antibody dupilumab reduced Th2 skewing. Sequencing revealed rare variants in genes involved in the IL-12/IFN-γ axis in several Th2-skewed patients, and we validated one such variant in IFNGR1 as hypomorphic.CONCLUSION Patients with DCM, especially males, should be screened for Th2 skewing of CD4+ T cells. Patients with Th2 skewing should be additionally screened for genetic defects in the IL-12/IFN-γ axis. Our findings give a mechanistic rationale for blockade of IL-4R in Th2-skewed patients with refractory coccidioidomycosis.FUNDING National Institute of Allergy and Infectious Diseases/NIH grants R21 AI149654 and U19 AI166059 and University of California Office of the President grant VFR-19-633386.

Authors

Timothy J. Thauland, Smriti S. Nagarajan, Alexis V. Stephens, Samantha L. Jensen, Anviksha Srivastava, Miguel A. Moreno Lastre, Terrie S. Ahn, Chantana Bun, Michael T. Trump, Royce H. Johnson, George R. Thompson III, Maria I. Garcia-Lloret, Valerie A. Arboleda, Manish J. Butte

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Figure 2

Th2 skewing of CD4+ T cells in coccidioidomycosis.

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Th2 skewing of CD4+ T cells in coccidioidomycosis.
(A) ICCS data for exp...
(A) ICCS data for expression of IFN-γ and IL-4 was used to generate Th2/Th1 ratios. An example of a Th1- and Th2-skewed patient is shown. (B) Th2 skewing in controls and patients with pulmonary disease or DCM. Th2 skewing is significantly more common in patients with DCM (Fisher’s exact test at optimal cutoff; at 95% specificity, P = 0.005 (Cont. vs. DCM) and P = 0.017 (Pulm. vs. DCM). (C) Th2/Th1 ratio stratification by sex reveals that Th2-skewed individuals with DCM are predominantly male (Fisher’s exact test at optimal cutoff; at 95% specificity, P = 0.004). (D) Among males, significantly more patients had DCM than pulmonary-only disease (Fisher’s exact test at optimal cutoff; at 95% specificity, P = 0.020). (E) Females had more IFN-γ–producing cells than males (Wilcoxon’s rank-sum test). Box-and-whisker plots show the median (thick black bar in the gray box), interquartile range (top and bottom edges of gray box), and 95% CI (the narrowed waist of the gray box around the median). Each dot is 1 participant.

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