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Deficiency of lncRNA SNHG12 impairs ischemic limb neovascularization by altering an endothelial cell cycle pathway
David A. Gross, Henry S. Cheng, Rulin Zhuang, Michael G. McCoy, Daniel Pérez-Cremades, Zachary Salyers, A.K.M. Khyrul Wara, Stefan Haemmig, Terence E. Ryan, Mark W. Feinberg
David A. Gross, Henry S. Cheng, Rulin Zhuang, Michael G. McCoy, Daniel Pérez-Cremades, Zachary Salyers, A.K.M. Khyrul Wara, Stefan Haemmig, Terence E. Ryan, Mark W. Feinberg
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Research Article Angiogenesis Cardiology

Deficiency of lncRNA SNHG12 impairs ischemic limb neovascularization by altering an endothelial cell cycle pathway

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Abstract

SNHG12, a long noncoding RNA (lncRNA) dysregulated in atherosclerosis, is known to be a key regulator of vascular senescence in endothelial cells (ECs). However, its role in angiogenesis and peripheral artery disease has not been elucidated. Hind-limb ischemia studies using femoral artery ligation (FAL) in mice showed that SNHG12 expression falls readily in the acute phase of the response to limb ischemia in gastrocnemius muscle and recovers to normal when blood flow recovery is restored to ischemic muscle, indicating that it likely plays a role in the angiogenic response to ischemia. Gain- and loss-of-function studies demonstrated that SNHG12 regulated angiogenesis — SNHG12 deficiency reduced cell proliferation, migration, and endothelial sprouting, whereas overexpression promoted these angiogenic functions. We identified SNHG12 binding partners by proteomics that may contribute to its role in angiogenesis, including IGF-2 mRNA–binding protein 3 (IGF2BP3, also known as IMP3). RNA-Seq profiling of SNHG12-deficient ECs showed effects on angiogenesis pathways and identified a strong effect on cell cycle regulation, which may be modulated by IMP3. Knockdown of SNHG12 in mice undergoing FAL using injected gapmeRs) decreased angiogenesis, an effect that was more pronounced in a model of insulin-resistant db/db mice. RNA-Seq profiling of the EC and non-EC compartments in these mice revealed a likely role of SNHG12 knockdown on Wnt, Notch, and angiopoietin signaling pathways. Together, these findings indicate that SNHG12 plays an important role in the angiogenic EC response to ischemia.

Authors

David A. Gross, Henry S. Cheng, Rulin Zhuang, Michael G. McCoy, Daniel Pérez-Cremades, Zachary Salyers, A.K.M. Khyrul Wara, Stefan Haemmig, Terence E. Ryan, Mark W. Feinberg

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Figure 9

RNA-Seq analysis of Snhg12 knockdown in db/db gastrocnemius.

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RNA-Seq analysis of Snhg12 knockdown in db/db gastrocnemius.
(A) Venn di...
(A) Venn diagram of overlapping process networks between RNA-Seq data sets of SNHG12 knockdown in HUVECs and Snhg12 knockdown in db/db mouse gastrocnemius EC and non-EC fractions yields blood vessel morphogenesis, chemotaxis, regulation of angiogenesis, and platelet-endothelium-leukocyte interaction process networks. (B) Gene set enrichment analysis using MetaCore process networks in db/db EC (left) and db/db non-EC (right) gastrocnemius cell fractions. (C) Gene network visualization of “development: blood vessel morphogenesis” in db/db gastrocnemius ECs shows significant downregulation of VEGF and FGF pathway nodes and significant upregulation of the antiangiogenic MMP19. (D) Gene network visualization of “development: blood vessel morphogenesis” in db/db gastrocnemius non-ECs shows significant downregulation of VEGF, FGF, and EGF signaling pathways in addition to VEGF receptor Tie2, Tie1, eNOS, Notch, and BMP pathways and significant upregulation of the antiangiogenic MMP19.

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ISSN 2379-3708

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