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Long noncoding RNA uc.230/CUG-binding protein 1 axis sustains intestinal epithelial homeostasis and response to tissue injury
Ting-Xi Yu, Sudhakar Kalakonda, Xiangzheng Liu, Naomi Han, Hee K. Chung, Lan Xiao, Jaladanki N. Rao, Tong-Chuan He, Jean-Pierre Raufman, Jian-Ying Wang
Ting-Xi Yu, Sudhakar Kalakonda, Xiangzheng Liu, Naomi Han, Hee K. Chung, Lan Xiao, Jaladanki N. Rao, Tong-Chuan He, Jean-Pierre Raufman, Jian-Ying Wang
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Research Article Gastroenterology

Long noncoding RNA uc.230/CUG-binding protein 1 axis sustains intestinal epithelial homeostasis and response to tissue injury

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Abstract

Intestinal epithelial integrity is commonly disrupted in patients with critical disorders, but the exact underlying mechanisms are unclear. Long noncoding RNAs transcribed from ultraconserved regions (T-UCRs) control different cell functions and are involved in pathologies. Here, we investigated the role of T-UCRs in intestinal epithelial homeostasis and identified T-UCR uc.230 as a major regulator of epithelial renewal, apoptosis, and barrier function. Compared with controls, intestinal mucosal tissues from patients with ulcerative colitis and from mice with colitis or fasted for 48 hours had increased levels of uc.230. Silencing uc.230 inhibited the growth of intestinal epithelial cells (IECs) and organoids and caused epithelial barrier dysfunction. Silencing uc.230 also increased IEC vulnerability to apoptosis, whereas increasing uc.230 levels protected IECs against cell death. In mice with colitis, reduced uc.230 levels enhanced mucosal inflammatory injury and delayed recovery. Mechanistic studies revealed that uc.230 increased CUG-binding protein 1 (CUGBP1) by acting as a natural decoy RNA for miR-503, which interacts with Cugbp1 mRNA and represses its translation. These findings indicate that uc.230 sustains intestinal mucosal homeostasis by promoting epithelial renewal and barrier function and that it protects IECs against apoptosis by serving as a natural sponge for miR-503, thereby preserving CUGBP1 expression.

Authors

Ting-Xi Yu, Sudhakar Kalakonda, Xiangzheng Liu, Naomi Han, Hee K. Chung, Lan Xiao, Jaladanki N. Rao, Tong-Chuan He, Jean-Pierre Raufman, Jian-Ying Wang

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Figure 3

uc.230 silencing increases IEC apoptosis.

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uc.230 silencing increases IEC apoptosis.
(A) Percentages of apoptotic ...
(A) Percentages of apoptotic cells after uc.230 silencing. Caco-2 cells were transfected with the anti-uc.230 or control oligo (control); 48 hours after transfection, apoptosis was measured following 4 hours of treatment with TNFα (20 ng/mL) plus CHX (10 μg/mL). Values are means ± SEM (n = 4 or 5). *P < 0.05 compared with controls. (B) Images of TUNEL staining in cells described in A. Experiments were performed 3 separate times and showed similar results. Original magnification, ×200. (C) Changes in levels of caspase-3 in cells described in A. Whole-cell lysates were harvested, and the levels of total and cleaved procaspase-3 were assessed by Western blot analysis. GAPDH immunoblotting was performed as an internal control for equal loading. (D) Cleaved caspase-3 staining in enteroids after uc.230 silencing ex vivo. Enteroids were derived from the small intestines of WT mice and transfected with anti-uc.230 or control oligo (control). Enteroids were exposed to TNFα (10 ng/mL) plus CHX (5 μg/mL) 48 hours after transfection, and apoptotic cell death was examined 3 hours thereafter. Scale bars: 100 μm. (E) Quantitative data of cleaved caspase-3+ cells in enteroids described in D. Values are means ± SEM (n = 4 or 5). *P < 0.05 compared with controls. (F) Changes in levels of cleaved caspase-3 in enteroids described in D. (G and H) Apoptotic cell death in enteroids exposed to LPS after uc.230 silencing. Enteroids were treated with LPS (50 μg/mL) and changes in the levels of cleaved caspase-3 were examined 24 hours thereafter. *P < 0.05 compared with controls (n = 5). Scale bars:100 µm. In A, E, and H, statistical significance was analyzed using unpaired, 2-tailed Student’s t tests.

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