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Biliary epithelial cells are facultative liver stem cells during liver regeneration in adult zebrafish
Isaac M. Oderberg, Wolfram Goessling
Isaac M. Oderberg, Wolfram Goessling
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Research Article Hepatology Stem cells

Biliary epithelial cells are facultative liver stem cells during liver regeneration in adult zebrafish

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Abstract

The liver is a highly regenerative organ, yet the presence of a dedicated stem cell population remains controversial. Here, we interrogate a severe hepatocyte injury model in adult zebrafish to define that regeneration involves a stem cell population. After near-total hepatocyte ablation, single-cell transcriptomic and high-resolution imaging analyses throughout the entire regenerative timeline reveal that biliary epithelial cells undergo transcriptional and morphological changes to become hepatocytes. As a population, biliary epithelial cells give rise to both hepatocytes and biliary epithelial cells. Biliary epithelial cells proliferate and dedifferentiate to express hepatoblast transcription factors prior to hepatocyte differentiation. This process is characterized by increased MAPK, PI3K, and mTOR signaling, and chemical inhibition of these pathways impairs biliary epithelial cell proliferation and fate conversion. We conclude that, upon severe hepatocyte ablation in the adult liver, biliary epithelial cells act as facultative liver stem cells in an EGFR-PI3K-mTOR–dependent manner.

Authors

Isaac M. Oderberg, Wolfram Goessling

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Figure 1

A single-cell atlas for the zebrafish liver.

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A single-cell atlas for the zebrafish liver.
(A) UMAP plot showing 11 ce...
(A) UMAP plot showing 11 cell type clusters identified. (B) Dot plot for the 3 key markers used in cluster identification for each cell type cluster. Gene expression is represented by log-transformed normalized UMI counts, and the average expression is the mean of expression values for all cells in a given cluster. The color key from gray to blue indicates low to high expression levels, respectively. The size key indicates the fraction of cells in an individual cluster expressing a specific gene. (C–G) Paired violin plots and immunofluorescence (green) for fabp10a (C), anxa4 (D), kdrl (E), hand2 (F), and mpeg1.1 (G). Scale bars: 50 μm. (H–J) Heatmaps displaying scaled expression for human (H), mouse (I), and zebrafish (J) orthologous genes. H, hepatocyte; B, biliary epithelial cell; E, endothelial cell; S, hepatic stellate cell; F, fibroblast; M, macrophage; and L, lymphocyte. Scaled expression values represent average expression values normalized to the minimum and maximum values in each row. The color key from blue to red indicates low to high scaled expression levels, respectively. Cell type markers are conserved across species.

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