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CD4 T cell–activating neoantigens enhance personalized cancer vaccine efficacy
Amanda L. Huff, Gabriella Longway, Jacob T. Mitchell, Lalitya Andaloori, Emily Davis-Marcisak, Fangluo Chen, Melissa R. Lyman, Rulin Wang, Jocelyn Mathew, Benjamin Barrett, Sabahat Rahman, James Leatherman, Mark Yarchoan, Nilofer S. Azad, Srinivasan Yegnasubramanian, Luciane T. Kagohara, Elana J. Fertig, Elizabeth M. Jaffee, Todd D. Armstrong, Neeha Zaidi
Amanda L. Huff, Gabriella Longway, Jacob T. Mitchell, Lalitya Andaloori, Emily Davis-Marcisak, Fangluo Chen, Melissa R. Lyman, Rulin Wang, Jocelyn Mathew, Benjamin Barrett, Sabahat Rahman, James Leatherman, Mark Yarchoan, Nilofer S. Azad, Srinivasan Yegnasubramanian, Luciane T. Kagohara, Elana J. Fertig, Elizabeth M. Jaffee, Todd D. Armstrong, Neeha Zaidi
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Research Article Immunology Oncology

CD4 T cell–activating neoantigens enhance personalized cancer vaccine efficacy

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Abstract

Personalized cancer vaccines aim to activate and expand cytotoxic antitumor CD8+ T cells to recognize and kill tumor cells. However, the role of CD4+ T cell activation in the clinical benefit of these vaccines is not well defined. We previously established a personalized neoantigen vaccine (PancVAX) for the pancreatic cancer cell line Panc02, which activates tumor-specific CD8+ T cells but required combinatorial checkpoint modulators to achieve therapeutic efficacy. To determine the effects of neoantigen-specific CD4+ T cell activation, we generated a vaccine (PancVAX2) targeting both major histocompatibility complex class I– (MHCI-) and MHCII-specific neoantigens. Tumor-bearing mice vaccinated with PancVAX2 had significantly improved control of tumor growth and long-term survival benefit without concurrent administration of checkpoint inhibitors. PancVAX2 significantly enhanced priming and recruitment of neoantigen-specific CD8+ T cells into the tumor with lower PD-1 expression after reactivation compared with the CD8+ vaccine alone. Vaccine-induced neoantigen-specific Th1 CD4+ T cells in the tumor were associated with decreased Tregs. Consistent with this, PancVAX2 was associated with more proimmune myeloid-derived suppressor cells and M1-like macrophages in the tumor, demonstrating a less immunosuppressive tumor microenvironment. This study demonstrates the biological importance of prioritizing and including CD4+ T cell–specific neoantigens for personalized cancer vaccine modalities.

Authors

Amanda L. Huff, Gabriella Longway, Jacob T. Mitchell, Lalitya Andaloori, Emily Davis-Marcisak, Fangluo Chen, Melissa R. Lyman, Rulin Wang, Jocelyn Mathew, Benjamin Barrett, Sabahat Rahman, James Leatherman, Mark Yarchoan, Nilofer S. Azad, Srinivasan Yegnasubramanian, Luciane T. Kagohara, Elana J. Fertig, Elizabeth M. Jaffee, Todd D. Armstrong, Neeha Zaidi

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Figure 4

PancVAX2 enhances infiltration of neoantigen-specific cytotoxic CD8+ T cells into the tumor with a less exhausted phenotype.

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PancVAX2 enhances infiltration of neoantigen-specific cytotoxic CD8+ T c...
C57BL/6 mice were implanted on the right flank, s.c., with 3 × 106 Panc02 cells on day 0. Mice were vaccinated s.c. at the base of the tail on day 14 and 21 with CD8 vaccine or PancVAX2 (n = 5). On day 28, tumors were harvested and pooled within treatment groups and dissociated into a single-cell suspension, and CD8+ T cells were isolated by magnetic positive selection kit. Isolated CD8+ T cells were cocultured overnight at a 1:1 ratio with T2-H2-Kb APCs pulsed with 5 μg/mL MHCI-specific peptides. Cocultures were then stained for activation marker and effector cytokine expression by flow cytometry analysis. (A) Representative gating of CD8 and CD137 marker expression on tumor infiltrating T cells cocultured with T-2 APCs pulsed with OVA peptide (control) or peptide 44. (B) Quantification of CD137 upregulation on tumor infiltrating CD8+ T cells cocultured with immunogenic CD8 epitopes. (C) Cytokine expression (GzmB, IFN-γ, and IL-2) from activated (CD137+) CD8+ T cells that stimulated a greater response in PancVAX2-treated tumors than in CD8 vaccinated tumors. (D) PD-1 expression measured by median fluorescence intensity (MFI) on activated (CD137+) CD8+ T cells after peptide restimulation. Symbols represent technical triplicates of pooled CD8+ T cells. Data are shown as mean ± SD. Significance was calculated by 2-way ANOVA followed by Sidak’s multiple-comparison test. *P ≤ 0.05, ***P ≤ 0.001, ****P ≤ 0.0001.

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