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Spatial transcriptomics implicates impaired BMP signaling in NF1 fracture pseudarthrosis in murine and patient tissues
Jonathan J. Rios, Conan Juan, John M. Shelton, Nandina Paria, Ila Oxendine, Meghan Wassell, Yared H. Kidane, Reuel Cornelia, Elise C. Jeffery, David A. Podeszwa, Simon J. Conway, Carol A. Wise, Robert J. Tower
Jonathan J. Rios, Conan Juan, John M. Shelton, Nandina Paria, Ila Oxendine, Meghan Wassell, Yared H. Kidane, Reuel Cornelia, Elise C. Jeffery, David A. Podeszwa, Simon J. Conway, Carol A. Wise, Robert J. Tower
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Research Article Bone biology

Spatial transcriptomics implicates impaired BMP signaling in NF1 fracture pseudarthrosis in murine and patient tissues

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Abstract

The neurofibromatosis type 1 (NF1) RASopathy is associated with persistent fibrotic nonunions (pseudarthrosis) in human and mouse skeletal tissue. Here, we performed spatial transcriptomics to define the molecular signatures occurring during normal endochondral healing following fracture in mice. Within the control fracture callus, we observed spatially restricted activation of morphogenetic pathways, such as TGF-β, WNT, and BMP. To investigate the molecular mechanisms contributing to Nf1-deficient delayed fracture healing, we performed spatial transcriptomic analysis on a Postn-cre;Nf1fl/– (Nf1Postn) fracture callus. Transcriptional analyses, subsequently confirmed through phospho-SMAD1/5/8 immunohistochemistry, demonstrated a lack of BMP pathway induction in Nf1Postn mice. To gain further insight into the human condition, we performed spatial transcriptomic analysis of fracture pseudarthrosis tissue from a patient with NF1. Analyses detected increased MAPK signaling at the fibrocartilaginous-osseus junction. Similar to that in the Nf1Postn fracture, BMP pathway activation was absent within the pseudarthrosis tissue. Our results demonstrate the feasibility of delineating the molecular and tissue-specific heterogeneity inherent in complex regenerative processes, such as fracture healing, and reconstructing phase transitions representing endochondral bone formation in vivo. Furthermore, our results provide in situ molecular evidence of impaired BMP signaling underlying NF1 pseudarthrosis, potentially informing the clinical relevance of off-label BMP2 as a therapeutic intervention.

Authors

Jonathan J. Rios, Conan Juan, John M. Shelton, Nandina Paria, Ila Oxendine, Meghan Wassell, Yared H. Kidane, Reuel Cornelia, Elise C. Jeffery, David A. Podeszwa, Simon J. Conway, Carol A. Wise, Robert J. Tower

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Figure 4

Spatial transcriptomic analysis of Nf1Postn fracture pseudarthrosis reveals impaired endochondral bone formation.

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Spatial transcriptomic analysis of Nf1Postn fracture pseudarthrosis reve...
(A) Immunohistochemical localization of periostin (green) and the osteoprogenitor marker osterix (magenta) in uninjured mouse tibia (top) and spatial mouse fractures (bottom). P, periosteum; C, cortical bone; M, marrow. (B) Bubble plot of Nf1 expression and percentage of expressing spots across cell clusters of the control and Nf1Postn callus. (C) Bubble plot depicting cluster-associated gene sets with significantly reduced expression in Nf1Postn fracture sections compared with control sections. (D) Relative expression of selected bone morphogenetic and MAPK pathways in the control and Nf1Postn fractures across SpatialTime. Fx, fracture. (E) Bubble plot expression of selected bone morphogenetic and MAPK pathways in the control and Nf1Postn fractures across skeletal cell clusters. (F) Immunohistochemical localization of phospho-SMAD1/5/8 in the control (top) and Nf1Postn (bottom) fracture calluses. Scale bar: 100 μm.

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