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Spatial transcriptomics implicates impaired BMP signaling in NF1 fracture pseudarthrosis in murine and patient tissues
Jonathan J. Rios, Conan Juan, John M. Shelton, Nandina Paria, Ila Oxendine, Meghan Wassell, Yared H. Kidane, Reuel Cornelia, Elise C. Jeffery, David A. Podeszwa, Simon J. Conway, Carol A. Wise, Robert J. Tower
Jonathan J. Rios, Conan Juan, John M. Shelton, Nandina Paria, Ila Oxendine, Meghan Wassell, Yared H. Kidane, Reuel Cornelia, Elise C. Jeffery, David A. Podeszwa, Simon J. Conway, Carol A. Wise, Robert J. Tower
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Research Article Bone biology

Spatial transcriptomics implicates impaired BMP signaling in NF1 fracture pseudarthrosis in murine and patient tissues

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Abstract

The neurofibromatosis type 1 (NF1) RASopathy is associated with persistent fibrotic nonunions (pseudarthrosis) in human and mouse skeletal tissue. Here, we performed spatial transcriptomics to define the molecular signatures occurring during normal endochondral healing following fracture in mice. Within the control fracture callus, we observed spatially restricted activation of morphogenetic pathways, such as TGF-β, WNT, and BMP. To investigate the molecular mechanisms contributing to Nf1-deficient delayed fracture healing, we performed spatial transcriptomic analysis on a Postn-cre;Nf1fl/– (Nf1Postn) fracture callus. Transcriptional analyses, subsequently confirmed through phospho-SMAD1/5/8 immunohistochemistry, demonstrated a lack of BMP pathway induction in Nf1Postn mice. To gain further insight into the human condition, we performed spatial transcriptomic analysis of fracture pseudarthrosis tissue from a patient with NF1. Analyses detected increased MAPK signaling at the fibrocartilaginous-osseus junction. Similar to that in the Nf1Postn fracture, BMP pathway activation was absent within the pseudarthrosis tissue. Our results demonstrate the feasibility of delineating the molecular and tissue-specific heterogeneity inherent in complex regenerative processes, such as fracture healing, and reconstructing phase transitions representing endochondral bone formation in vivo. Furthermore, our results provide in situ molecular evidence of impaired BMP signaling underlying NF1 pseudarthrosis, potentially informing the clinical relevance of off-label BMP2 as a therapeutic intervention.

Authors

Jonathan J. Rios, Conan Juan, John M. Shelton, Nandina Paria, Ila Oxendine, Meghan Wassell, Yared H. Kidane, Reuel Cornelia, Elise C. Jeffery, David A. Podeszwa, Simon J. Conway, Carol A. Wise, Robert J. Tower

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Figure 5

Spatial transcriptomic analysis of patient-derived fracture pseudarthrosis tissue reveals a deficiency in BMP signaling.

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Spatial transcriptomic analysis of patient-derived fracture pseudarthros...
(A and B) Volcano plot (A) and heatmap (B) showing DEGs between primary cells derived from patients with NF1 fracture pseudarthrosis and primary cells cultured from control bones from patients with NF1. (C) GSEA results demonstrating enrichment of pathways for DEGs upregulated (magenta) and downregulated (blue) in primary cells derived from patients with NF1 fracture compared with primary cells from patients with NF1 acting as controls. (D) Longitudinal radiography of a patient with NF1 fracture pseudarthrosis demonstrating initial fracture at birth and subsequent refracture. Arrows indicate location of the refracture. (E) Histologic evaluation of patient fracture pseudarthrosis, including H&E (left), picrosirius red/alcian blue (middle), and Masson’s trichrome (right) staining. (F and G) Spatial expression (F) and relative SpatialTime expression (G) of DEGs (Frac. DEGs; from A) and MAPK pathway genes. (H and I) Spatial expression (H) and relative SpatialTime expression (I) of TGF-β and BMP pathway genes. (J) Immunohistochemical localization of phospho-SMAD1/5/8 in the human NF1 pseudarthrosis specimen. Scale bar: 100 μm.

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