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Transcriptional analysis of primary ciliary dyskinesia airway cells reveals a dedicated cilia glutathione pathway
Jeffrey R. Koenitzer, Deepesh Kumar Gupta, Wang Kyaw Twan, Huihui Xu, Nicholas Hadas, Finn J. Hawkins, Mary Lou Beermann, Gervette M. Penny, Nathan T. Wamsley, Andrew Berical, Michael B. Major, Susan K. Dutcher, Steven L. Brody, Amjad Horani
Jeffrey R. Koenitzer, Deepesh Kumar Gupta, Wang Kyaw Twan, Huihui Xu, Nicholas Hadas, Finn J. Hawkins, Mary Lou Beermann, Gervette M. Penny, Nathan T. Wamsley, Andrew Berical, Michael B. Major, Susan K. Dutcher, Steven L. Brody, Amjad Horani
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Research Article Cell biology Pulmonology

Transcriptional analysis of primary ciliary dyskinesia airway cells reveals a dedicated cilia glutathione pathway

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Abstract

Primary ciliary dyskinesia (PCD) is a genetic condition that results in dysmotile cilia. The repercussions of cilia dysmotility and gene variants on the multiciliated cell remain poorly understood. We used single-cell RNA-Seq, proteomics, and advanced microscopy to compare primary culture epithelial cells from patients with PCD, their heterozygous mothers, and healthy individuals, and we induced pluripotent stem cells (iPScs) generated from a patient with PCD. Transcriptomic analysis revealed unique signatures in PCD airway cells compared with their mothers’ cells and the cells of healthy individuals. Gene expression in heterozygous mothers’ cells diverged from both control and PCD cells, marked by increased inflammatory and cellular stress signatures. Primary and iPS-derived PCD multiciliated cells had increased expression of glutathione-S-transferases GSTA2 and GSTA1, as well as NRF2 target genes, accompanied by elevated levels of reactive oxygen species (ROS). Immunogold labeling in human cilia and proteomic analysis of the ciliated organism Chlamydomonas reinhardtii demonstrated that GSTA2 localizes to motile cilia. Loss of human GSTA2 and C. reinhardtii GSTA resulted in slowed cilia motility, pointing to local cilia regulatory roles. Our findings identify cellular responses unique to PCD variants and independent of environmental stress and uncover a dedicated ciliary GSTA2 pathway essential for normal motility that may be a therapeutic target.

Authors

Jeffrey R. Koenitzer, Deepesh Kumar Gupta, Wang Kyaw Twan, Huihui Xu, Nicholas Hadas, Finn J. Hawkins, Mary Lou Beermann, Gervette M. Penny, Nathan T. Wamsley, Andrew Berical, Michael B. Major, Susan K. Dutcher, Steven L. Brody, Amjad Horani

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Figure 2

Multiciliated cells single cell analysis and velocity trajectories.

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Multiciliated cells single cell analysis and velocity trajectories.
(A) ...
(A) Scheme depicting the canonical differentiation pathway of multiciliated cells. (B) FOXJ1, the ciliogenesis master regulator, is shown overlayed on the scRNAseq UMAP to show the multiciliated cell clusters. (C) UMAP of extracted FOXJ1+ cells shows 5 unique multiciliated cell subclusters, marked Cil1 for (FOXJ1+ P63+) basalociliated cells, Cil2 for (FOXJ1+ SLURP2+) secretociliated cells, Cil3 for (FOXJ1+ CCNO+ DEUP1+ PLK4+) deuterostomal cells, Cil4 for (FOXJ1+ DNAH7+, low c1orf189) early mature multiciliated cells, and Cil5 for (FOXJ1+ DNAH7+, high c1orf189) late mature multiciliated cells. (D) Violin plot showing known multiciliated cell differentiation transcriptional markers in each of the multiciliated cell subclusters. (E) UMAP showing expression levels of GMNC and E2F1 expression levels in airway cells. (F) Pseudotime analysis showing projected differentiation trajectory of cells overlayed on the UMAP of cell clusters showing no trajectories from secretory cells into ciliated cells. (G) Velocity analysis showing unsupervised high-dimensional vectors predicting future state of individual cells, demonstrating a direct relationship between differentiation of basal cells and multiciliated cells.

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ISSN 2379-3708

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