Go to The Journal of Clinical Investigation
  • About
  • Editors
  • Consulting Editors
  • For authors
  • Publication ethics
  • Publication alerts by email
  • Transfers
  • Advertising
  • Job board
  • Contact
  • Physician-Scientist Development
  • Current issue
  • Past issues
  • By specialty
    • COVID-19
    • Cardiology
    • Immunology
    • Metabolism
    • Nephrology
    • Oncology
    • Pulmonology
    • All ...
  • Videos
  • Collections
    • In-Press Preview
    • Resource and Technical Advances
    • Clinical Research and Public Health
    • Research Letters
    • Editorials
    • Perspectives
    • Physician-Scientist Development
    • Reviews
    • Top read articles

  • Current issue
  • Past issues
  • Specialties
  • In-Press Preview
  • Resource and Technical Advances
  • Clinical Research and Public Health
  • Research Letters
  • Editorials
  • Perspectives
  • Physician-Scientist Development
  • Reviews
  • Top read articles
  • About
  • Editors
  • Consulting Editors
  • For authors
  • Publication ethics
  • Publication alerts by email
  • Transfers
  • Advertising
  • Job board
  • Contact
Single-cell transcriptional analysis reveals allergen-specific signatures in human γδ T cells
Kendall Kearns, Sloan A. Lewis, Esther Dawen Yu, Adam Abawi, Eric Wang, Synaida Maiche, Monalisa Mondal, Pandurangan Vijayanand, Grégory Seumois, Bjoern Peters, Alessandro Sette, Ricardo Da Silva Antunes
Kendall Kearns, Sloan A. Lewis, Esther Dawen Yu, Adam Abawi, Eric Wang, Synaida Maiche, Monalisa Mondal, Pandurangan Vijayanand, Grégory Seumois, Bjoern Peters, Alessandro Sette, Ricardo Da Silva Antunes
View: Text | PDF
Research Article Cell biology Immunology

Single-cell transcriptional analysis reveals allergen-specific signatures in human γδ T cells

  • Text
  • PDF
Abstract

The role of gamma-delta T (γδ T) cells in immune responses to common allergens is poorly understood. Here, we utilized single-cell (sc) transcriptomic analysis of allergen-reactive γδ T cells in humans to characterize the transcriptional landscapes and TCR repertoires in response to cockroach (CR) and mouse (MO) allergens. Using a potentially novel activation-induced marker (AIM) assay that allows detection of γδ T cells combined with scRNA sequencing and TCR repertoire analysis, we identified both shared and allergen-specific γδ T cell activation patterns and gene expression profiles. While CR extract activated both Vδ1 and Vδ2 subsets, MO extract primarily stimulated Vδ2 cells. Our analysis revealed allergen-specific clusters with distinct functional signatures, including enhanced inflammatory responses and cytotoxic effector functions in MO-specific γδ T cells and natural killer cell–mediated immunity and IFN-γ signaling in CR-specific populations. Comparison of allergic and nonallergic individuals highlighted differences in gene expression and TCR repertoires, including a higher IFNG expression in the CR-allergic compared with nonallergic cohorts, suggesting that phenotypic and functional differences are associated with γδ T allergen responses. This study provides insights into the cellular and molecular heterogeneity and functionality of allergen-reactive γδ T cells, offering a foundation for understanding their role in allergic diseases and potential therapeutic interventions.

Authors

Kendall Kearns, Sloan A. Lewis, Esther Dawen Yu, Adam Abawi, Eric Wang, Synaida Maiche, Monalisa Mondal, Pandurangan Vijayanand, Grégory Seumois, Bjoern Peters, Alessandro Sette, Ricardo Da Silva Antunes

×

Figure 3

MO-specific clusters are defined by distinct cytokine production, activation, and dominant Vγ9Vδ2 TCR pairing.

Options: View larger image (or click on image) Download as PowerPoint
MO-specific clusters are defined by distinct cytokine production, activa...
(A) Heatmap of average scaled expression of the top 50 genes per cluster. Genes listed at left are unique to that specific cluster. (B) Pathway enrichment of genes with a log2 fold-change > 0.5 in each cluster compared with all other clusters (i.e., not solely MO-specific clusters). (C) Volcano plot showing DEGs between allergic and nonallergic samples stimulated with MO extract within MO-specific clusters. Selected genes annotated. (D) Pathway enrichment of DEGs found upregulated in nonallergic (left) and allergic (right) samples. The number of DEGs out of the total number of genes within each pathway are noted.

Copyright © 2026 American Society for Clinical Investigation
ISSN 2379-3708

Sign up for email alerts