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Mitochondrial dysfunction drives natural killer cell dysfunction in systemic lupus erythematosus
Natalia Fluder, Morgane Humbel, Emeline Recazens, Alexis A. Jourdain, Camillo Ribi, George Tsokos, Denis Comte
Natalia Fluder, Morgane Humbel, Emeline Recazens, Alexis A. Jourdain, Camillo Ribi, George Tsokos, Denis Comte
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Research Article Immunology

Mitochondrial dysfunction drives natural killer cell dysfunction in systemic lupus erythematosus

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Abstract

Systemic lupus erythematosus (SLE) is a chronic autoimmune disease characterized by immune dysregulation and widespread inflammation. NK cells display marked functional impairment in SLE, including defective cytotoxicity and cytokine production, but the underlying mechanisms remain poorly defined. Here, we show that mitochondrial dysfunction and impaired mitophagy are key contributors to NK cell abnormalities in SLE. Using complementary structural, metabolic, and proteomic analyses, we found that SLE NK cells accumulate enlarged and dysfunctional mitochondria, exhibit impaired lysosomal acidification, and release mitochondrial DNA into the cytosol — features consistent with defective mitochondrial quality control. Transcriptional and proteomic profiling revealed downregulation of key mitophagy-related genes and pathways. These abnormalities correlated with reduced NK cell degranulation and cytokine production. We then tested whether enhancing mitochondrial quality control could restore NK cell function. The mitophagy activator Urolithin A improved mitochondrial and lysosomal parameters and rescued NK cell effector responses in vitro. Hydroxychloroquine partially restored mitochondrial recycling and reduced cytosolic mtDNA. These findings suggest that defective mitophagy and mitochondrial dysfunction are major contributors to NK cell impairment in SLE and that targeting mitochondrial quality control may represent a promising strategy for restoring immune balance in this disease.

Authors

Natalia Fluder, Morgane Humbel, Emeline Recazens, Alexis A. Jourdain, Camillo Ribi, George Tsokos, Denis Comte

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Figure 3

NK cells from patients with SLE harbor damaged mitochondria with disrupted ultrastructure and impaired mitophagy.

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NK cells from patients with SLE harbor damaged mitochondria with disrupt...
(A) Mitochondrial super-oxide levels in NK cells from patients with SLE and healthy controls (HC) assessed by flow cytometry, based on the frequency of MitoSOX+/MTG+ cells (left panel) and stratified by disease activity score (SLEDAI) (right panel). *P < 0.05 by paired, 2-tailed Student’s t test (left panel) or by mixed-effects analysis (right panel). (B) Representative transmission electron microscopy (TEM) images of NK cells from patients with SLE showing mitochondrial ultrastructural abnormalities. Low-magnification image (left panel) shows whole cell (scale bar: 1 μm); high magnification image (right panel) shows subcellular details (scale bar: 200 nm). (C and D) NK cells isolated from HC (n = 10) and patients with SLE (n = 10) were subjected to subcellular fractionation. Relative mitochondrial DNA (mtDNA) abundance in whole-cell extracts (WCE), cytosolic, and mitochondrial fractions was quantified by qPCR using ND2 (C) and D-loop (D) regions. Data were normalized to the mean of HC samples. A log2 fold change > 0.5 or < –0.5 was considered significant; *P < 0.05 by Mann-Whitney U test. (E) Expression of mitophagy-related genes (LC3B, LAMP2, PINK1, PARK2, PIKC3C, GABARAPL1, ULK1, and BECN1) in NK cells from HC (n = 12) and patients with SLE (n = 12) assessed by qPCR and normalized to HC samples. A log2 fold change > 0.5 or < –0.5 was considered significant; *P < 0.05 and **P < 0.01 by Mann-Whitney U test.

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