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Network modeling predicts how DYRK1A inhibition promotes cardiomyocyte cycling after ischemia/reperfusion injury
Bryce C. Murillo, Alexander Young, Kaitlyn L. Wintruba, Alexander J. Eichert, Klara Siejda, Dennon Hoernig, Leigh A. Bradley, Bryana N. Harris, Catherine Zhao, Michelle Wu, Emmanuel Deau, Mattias F. Lindberg, Laurent Meijer, Jeffrey J. Saucerman, Matthew J. Wolf
Bryce C. Murillo, Alexander Young, Kaitlyn L. Wintruba, Alexander J. Eichert, Klara Siejda, Dennon Hoernig, Leigh A. Bradley, Bryana N. Harris, Catherine Zhao, Michelle Wu, Emmanuel Deau, Mattias F. Lindberg, Laurent Meijer, Jeffrey J. Saucerman, Matthew J. Wolf
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Research Article Cardiology Cell biology

Network modeling predicts how DYRK1A inhibition promotes cardiomyocyte cycling after ischemia/reperfusion injury

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Abstract

The adult mammalian heart has a limited ability to regenerate lost myocardium following myocardial infarction (MI), largely due to the poor proliferative capacity of cardiomyocytes (CMs). Dual-specificity tyrosine phosphorylation–regulated kinase 1A (DYRK1A) is a known regulator of cell quiescence, though the mechanisms underlying its function remain unclear. Previous studies have shown that pharmacological inhibition of DYRK1A using harmine induces CM cell cycle reentry after ischemia/reperfusion (I/R) MI. Here, we developed a computational network model of DYRK1A-mediated regulation of the cell cycle, which predicts how DYRK1A inhibition promotes CM reentry. To validate these predictions, we tested selective DYRK1A inhibitors and observed robust induction of cell cycle activity in neonatal rat cardiomyocytes (NRCMs). Integrating our network model with bulk RNA sequencing data from DYRK1A inhibitor–treated NRCMs, we identified E2F1 as a key transcriptional driver of cell cycle gene expression. Finally, we demonstrate that both pharmacological and post-developmental inhibition of DYRK1A enhances heart function and increases CM cycling following I/R MI. Our findings suggest that functional recovery induced by small-molecule inhibitors of DYRK1A is mediated by the induction of cycling CMs.

Authors

Bryce C. Murillo, Alexander Young, Kaitlyn L. Wintruba, Alexander J. Eichert, Klara Siejda, Dennon Hoernig, Leigh A. Bradley, Bryana N. Harris, Catherine Zhao, Michelle Wu, Emmanuel Deau, Mattias F. Lindberg, Laurent Meijer, Jeffrey J. Saucerman, Matthew J. Wolf

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Figure 6

LCTB-92 improves heart function after I/R MI.

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LCTB-92 improves heart function after I/R MI.
(A) Schematic of 12-week-o...
(A) Schematic of 12-week-old αDKRC:RLTG mice that were treated with LCTB-92 or isomeric control for 10 days (10 mg/kg) following I/R MI. (B) Cardiac function measurements of αDKRC:RLTG mice treated with LCTB-92 or isomeric control after I/R MI, showing left ventricular ejection fraction (LVEF) 2 and 4 weeks after MI. Data are shown as mean ± SD, and circles are measurements of individual animals. N = 20 for ISO-92 group and N = 19 for LCTB-92 group. P values were calculated using 2-way ANOVA followed by Bonferroni’s multiple-comparison test. (C and D) Average infarct size (percent) across whole heart sections from hearts treated with LCTB-92 or isomeric control 4 weeks after MI (C) with representative images (D). Data are shown as mean ± SD, and circles are measurements of individual animals. N = 18 for ISO-92 group and N = 17 for LCTB-92 group. Two-sample t test was performed for C.

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