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Derivation and characterization of ubiquitin-specific protease 18 inhibitors
Blessing O. Ogunlade, Kevin N. Dalby, Samuel C. Okpechi, Eun Jeong Cho, Liliya Tyutyunyk-Massey, Zibo Chen, Xiuxia Liu, Joseph Ivanic, Brian Luke, Shyamal D. Desai, Yair Alfaro, Ashwini K. Devkota, Rae M. Sammons, Gilbert G. Privé, Xi Liu, Ethan Dmitrovsky
Blessing O. Ogunlade, Kevin N. Dalby, Samuel C. Okpechi, Eun Jeong Cho, Liliya Tyutyunyk-Massey, Zibo Chen, Xiuxia Liu, Joseph Ivanic, Brian Luke, Shyamal D. Desai, Yair Alfaro, Ashwini K. Devkota, Rae M. Sammons, Gilbert G. Privé, Xi Liu, Ethan Dmitrovsky
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Research Article Cell biology Oncology

Derivation and characterization of ubiquitin-specific protease 18 inhibitors

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Abstract

Ubiquitin-Specific Protease 18 (USP18) is a deISGylation enzyme and antineoplastic target. To develop USP18 inhibitors, an enzymatically active human recombinant USP18 protein was engineered suitable for high-throughput screening of ~80,000 chemical compounds. Three of them substantially inhibited USP18 enzymatic activity, with β-lapachone having prominent antineoplastic activity. Independent β-lapachone treatments of murine and human lung cancer cell lines statistically significantly reduced proliferation and increased apoptosis. Gain of USP18 expression antagonized these effects. β-Lapachone treatments statistically significantly repressed lung cancer xenograft growth. β-Lapachone increased reactive oxygen species (ROS), but antineoplastic effects occurred at dosages with negligible ROS production. ROS scavenger treatments did not rescue β-lapachone effects at these concentrations, consistent with an ROS-independent mechanism. IFN-Stimulated Response Element (ISRE) reporter assays following β-lapachone treatment activated this reporter. USP18 cotransfection antagonized this activity. β-Lapachone treatments increased global ISGylation. RNA-seq of lung cancer cells engineered with or without enhanced USP18 expression showed specific pathways affected by β-lapachone treatment. Proteomic analysis of these treated cells revealed known and new ISGylated proteins. In silico modeling identified a unique USP18 pocket where these USP18 inhibitors bind. Engineered mutation of this pocket disrupted β-lapachone activity. Taken together, β-lapachone is an antineoplastic tool compound useful for USP18 inhibitor development.

Authors

Blessing O. Ogunlade, Kevin N. Dalby, Samuel C. Okpechi, Eun Jeong Cho, Liliya Tyutyunyk-Massey, Zibo Chen, Xiuxia Liu, Joseph Ivanic, Brian Luke, Shyamal D. Desai, Yair Alfaro, Ashwini K. Devkota, Rae M. Sammons, Gilbert G. Privé, Xi Liu, Ethan Dmitrovsky

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Figure 3

β-Lapachone antagonizes USP18-dependent activity.

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β-Lapachone antagonizes USP18-dependent activity.
(A) IFN-stimulated res...
(A) IFN-stimulated response element (ISRE) reporter assays were performed to evaluate the effect of β-lapachone treatment on IFN pathway activation. A549 lung cancer cells were transiently transfected with an insertless vector (EV) as a control or a USP18 expression vector and treated with the indicated concentrations of β-lapachone with or without IFN (200 units) cotreatment. β-Lapachone treatment statistically significantly increased ISRE reporter activity in a concentration-dependent manner, whereas USP18 overexpression antagonized this activation. (B) Immunoblot analyses were performed to assess the effects of β-lapachone treatment on global ISGylation in A549 cells. Representative immunoblot images and the quantification of conjugated ISG15 species within the indicated bracketed region of 4 independent experiments are displayed. A statistically significant increase in global ISGylation was evident after dose-dependent β-lapachone treatments. (C) Independent immunoblot analyses of NEDD8, ubiquitin, and SUMO-2/3 conjugation after β-lapachone treatment as compared with vehicle control were performed to evaluate pathway selectivity. β-Lapachone treatment did not confer detectable changes in ubiquitin or NEDD8 conjugation. Only a modest change in SUMO-2/3 conjugation was observed at the highest β-lapachone concentration. The vinculin signals present in the middle and right panels were from the same immunoblot and lysate that were independently probed for ubiquitin and SUMO-2/3. The NEDD8 immunoblot was from a different lysate. These immunoblots present representative signals for each of these species. (D) Quantification of the NEDD8, ubiquitin, and SUMO-2/3 conjugates shown in C was performed using 3 independent replicate experiments. Two-tailed Student’s t tests compared differences between study groups with a P value below 0.05 deemed statistically significant. Data are shown as mean ± SD. *P < 0.05, **P < 0.01, ***P < 0.001 and ****P < 0.0001.

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