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Derivation and characterization of ubiquitin-specific protease 18 inhibitors
Blessing O. Ogunlade, Kevin N. Dalby, Samuel C. Okpechi, Eun Jeong Cho, Liliya Tyutyunyk-Massey, Zibo Chen, Xiuxia Liu, Joseph Ivanic, Brian Luke, Shyamal D. Desai, Yair Alfaro, Ashwini K. Devkota, Rae M. Sammons, Gilbert G. Privé, Xi Liu, Ethan Dmitrovsky
Blessing O. Ogunlade, Kevin N. Dalby, Samuel C. Okpechi, Eun Jeong Cho, Liliya Tyutyunyk-Massey, Zibo Chen, Xiuxia Liu, Joseph Ivanic, Brian Luke, Shyamal D. Desai, Yair Alfaro, Ashwini K. Devkota, Rae M. Sammons, Gilbert G. Privé, Xi Liu, Ethan Dmitrovsky
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Research Article Cell biology Oncology

Derivation and characterization of ubiquitin-specific protease 18 inhibitors

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Abstract

Ubiquitin-Specific Protease 18 (USP18) is a deISGylation enzyme and antineoplastic target. To develop USP18 inhibitors, an enzymatically active human recombinant USP18 protein was engineered suitable for high-throughput screening of ~80,000 chemical compounds. Three of them substantially inhibited USP18 enzymatic activity, with β-lapachone having prominent antineoplastic activity. Independent β-lapachone treatments of murine and human lung cancer cell lines statistically significantly reduced proliferation and increased apoptosis. Gain of USP18 expression antagonized these effects. β-Lapachone treatments statistically significantly repressed lung cancer xenograft growth. β-Lapachone increased reactive oxygen species (ROS), but antineoplastic effects occurred at dosages with negligible ROS production. ROS scavenger treatments did not rescue β-lapachone effects at these concentrations, consistent with an ROS-independent mechanism. IFN-Stimulated Response Element (ISRE) reporter assays following β-lapachone treatment activated this reporter. USP18 cotransfection antagonized this activity. β-Lapachone treatments increased global ISGylation. RNA-seq of lung cancer cells engineered with or without enhanced USP18 expression showed specific pathways affected by β-lapachone treatment. Proteomic analysis of these treated cells revealed known and new ISGylated proteins. In silico modeling identified a unique USP18 pocket where these USP18 inhibitors bind. Engineered mutation of this pocket disrupted β-lapachone activity. Taken together, β-lapachone is an antineoplastic tool compound useful for USP18 inhibitor development.

Authors

Blessing O. Ogunlade, Kevin N. Dalby, Samuel C. Okpechi, Eun Jeong Cho, Liliya Tyutyunyk-Massey, Zibo Chen, Xiuxia Liu, Joseph Ivanic, Brian Luke, Shyamal D. Desai, Yair Alfaro, Ashwini K. Devkota, Rae M. Sammons, Gilbert G. Privé, Xi Liu, Ethan Dmitrovsky

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Figure 5

Mutational analyses validate the USP18 residues critical for β-lapachone binding and activity.

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Mutational analyses validate the USP18 residues critical for β-lapachone...
(A) Binding energy calculations and 1,000 nanosecond molecular dynamics simulations were performed to evaluate the effects of single (D139K, F259K, T266K), double, and triple amino acid substitutions on β-lapachone–USP18 interactions. Mutation of any of the 3 key residues markedly reduced predicted binding affinity, with the triple mutant (D139K/F259K/T266K) abolishing stable binding. (B) Molecular dynamics visualization of β-lapachone (green) bound to WT and mutant USP18 proteins (blue) after 1,000 nanosecond simulations showed stable binding to WT USP18 but with ejection of β-lapachone from mutant USP18 species. (C) Immunoblot analysis confirmed comparable expression of WT and mutant USP18 proteins following transfection of each construct, including single and triple mutants. (D) The A549 lung cancer cell line was transfected with an ISRE luciferase reporter plasmid together with either empty vector, WT USP18, or USP18 constructs harboring individual (D139K, F259K, T266K) or triple mutations at the indicated residues. Luciferase activity was measured 48 hours after transfection and normalized to Renilla luciferase. Two-tailed Student’s t tests compared differences between study groups with a P value below 0.05 deemed statistically significant. Data are shown as mean ± SD. *P < 0.05 and **P < 0.01.

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