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Patient-derived neomorphic SEPTIN6 mutations induce hematopoietic stem cell senescence underlying congenital neutropenia and myelodysplasia
Safa F. Mohamad, Meaghan McGuinness, Yu Zhou, Xin Jiang, Gabriele Casirati, Adele Mucci, Sara Canovas Nunes, Akiko Shimamura, Pietro Genovese, David A. Williams
Safa F. Mohamad, Meaghan McGuinness, Yu Zhou, Xin Jiang, Gabriele Casirati, Adele Mucci, Sara Canovas Nunes, Akiko Shimamura, Pietro Genovese, David A. Williams
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Research Article Hematology Oncology

Patient-derived neomorphic SEPTIN6 mutations induce hematopoietic stem cell senescence underlying congenital neutropenia and myelodysplasia

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Abstract

Septins are RAS-like GTP-binding proteins involved in cytoskeletal organization and cellular division. We previously described 2 pediatric patients harboring SEPT6 germline mutations (GM1: SEPT6 c.1282T>C and GM2: SEPT6 c.1282T>A) presenting with congenital neutropenia associated with the development of myelodysplastic syndrome. In one patient, an additional somatic mutation (SM: SEPT6 c.43C>T) was detected at a low allelic fraction in the BM. Here, we describe the consequences of these mutations for hematopoiesis. Transgenic expression or gene editing of GM1 or GM2 in human CD34+ cells led to enlarged, multinucleated cells associated with accelerated exhaustion and premature senescence of hematopoietic stem and progenitor cells (HSPCs). Senescence defects were associated with the upregulation of mTOR phosphorylation, and pharmacologic inhibition of the mTOR pathway resulted in rescue of senescence. In parallel, HSPCs exhibited marked mitochondrial abnormalities, including increased expression of OPA-1, a key regulator of mitochondrial fusion, and enhanced oxygen consumption during mitochondrial respiration. Introduction of the SM in cis with GM1 mitigated all observed defects. Collectively, our findings demonstrate a gain-of-function mechanism underlying marrow failure in patients carrying germline SEPT6 mutations and suggest that acquisition of a secondary somatic SEPT6 variant may confer a compensatory effect within hematopoietic cells.

Authors

Safa F. Mohamad, Meaghan McGuinness, Yu Zhou, Xin Jiang, Gabriele Casirati, Adele Mucci, Sara Canovas Nunes, Akiko Shimamura, Pietro Genovese, David A. Williams

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Figure 1

Transgenic expression of GM1 in CD34+ cells leads to defective hematopoiesis.

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Transgenic expression of GM1 in CD34+ cells leads to defective hematopoi...
(A–C) The SEPT6 c.1282T>C germline mutant (GM1) was introduced into WT human CD34+ cells. (A) Schema of the lentiviral vector (LVV) used to introduce GM1 into WT human CD34+ cells. A stuffer sequence was used as a negative open reading frame control. (B and C) Two days after transduction, mCherry+CD34+ cells were isolated. (B) Cytospins of sorted CD34+ cells cultured for 5 days showing myeloid cell morphology. Original magnification, ×100. n = 3 biological replicates with similar results. (C) Hematopoietic progenitor assays of cells plated 2 days after transduction. Colonies were counted as GM, BFU-E, or GEMM 14 days after plating. n = 3 independent experiments performed in triplicate. (D–I) Single base pair gene editing was performed to introduce GM1 into human CD34+ cells. (D) The arrow indicates the base pair edited. (E) SEPT6 GM1–edited CD34+ cells were cultured for 5 days, fixed, and stained. Original magnification, ×100. The red arrow indicates an enlarged, multinucleated cell and the black arrow indicates cytoplasmic protrusions similar to filopodia. n = 3 biological replicates with similar results. (F and G) Two hundred and fifty edited cells were plated in hematopoietic progenitor assays 2 days after electroporation. Colonies were counted after 14 days and scored by morphology (F) and colony size (G). n = 3 independent experiments performed in triplicate. (H and I) Edited CD34+ cells (1 × 106) were injected retro-orbitally into NBSGW mice. (H) Chimerism was analyzed monthly in the peripheral blood (PB) and at the 4-month time point in bone marrow (BM) using flow cytometric analysis of human CD45+ (donor cells). (I) Four months after xenotransplantation, BM was sorted into myeloid, lymphoid, and CD34+ HSPC compartments. Sorted cells were sequenced to determine editing frequency. Graphs represent 2 independent xenotransplants combined. n = 7–11 mice. Data presented as mean ± SD. All experiments were analyzed using 2-tailed t tests. *P < 0.05; **P < 0.005; ****P < 0.0001.

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